Table 2 List of candidate genes within the QTL interval and their exonic polymorphisms between fast (TARS-HT1) and slow imbibing (PR9920–171) genotypes
From: The genetics and physiology of seed dormancy, a crucial trait in common bean domestication
Gene ID | Start | End | Arabidopsis homolog | Annotation | Abbreviation | Location | Indels a | Point mutations b |
|---|---|---|---|---|---|---|---|---|
Phvul.003G277400 | 51,431,904 | 51,434,651 | AT4G19440.1 | Tetratricopeptide repeat -like | TPR-like | Chloroplast | – | 1(T➔ M) |
Phvul.003G277500 | 51,439,244 | 51,444,213 | AT4G19420.1 | Pectin acetylesterase 8 | PAE-8-1 | Extracellular region | – | – |
Phvul.003G277600 | 51,454,061 | 51,458,474 | AT4G19420.1 | Pectin acetylesterase 8 | PAE-8-2 | Extracellular region | 1(5 bp) | – |
Phvul.003G277700 | 51,459,936 | 51,468,848 | AT5G45290.1 | RING/U-box superfamily | Nucleus | – | – | |
Phvul.003G277800 | 51,469,994 | 51,475,970 | AT1G31650.1 | RHO guanyl-nucleotide exchange factor 14 | Mitochondrion | – | – | |
Phvul.003G277900 | 51,479,760 | 51,480,383 | AT5G45320.1 | Late embryogenesis abundant protein | LEA | Chloroplast | – | – |
Phvul.003G278000 | 51,490,499 | 51,496,568 | AT1G77360.1 | Arabidopsis pentatricopeptide repeat 6 | APPR-6 | Mitochondrion | – | – |
Phvul.003G278100 | 51,504,483 | 51,504,979 | AT2G35612.1 | Precursor of CEP4 – regulate nitrogen uptake | Extracellular region | – | – | |
Phvul.003G278200 | 51,514,163 | 51,522,692 | AT4G19380.1 | Long-chain fatty alcohol oxidase − 4 | FAO-4 | Chloroplast | – | 4(G➔D, M➔L,I➔V, I➔F) |
Phvul.003G278300 | 51,525,377 | 51,527,087 | AT4G19370.1 | MODIFYING WALL LIGNIN-2 | MWL-2 | Extracellular region | – | – |
Phvul.003G278400 | 51,539,102 | 51,541,642 | AT4G19230.1 | Cytochrome P450–707 – A - polypeptide 1 | CYP707A1 | Chloroplast | – | 1(P➔A) |