Whole-genome meta-analysis coupled with haplotype analysis reveal new genes and functional haplotypes conferring pre-harvest sprouting in rice

Table 2 Description of breeders’ mQTL associated with PHS/seed dormancy

Meta-QTL^a	Chr	Position (cM)	Flanking markers	(CI)^b	No. of QTL	PVE (%)^c	Avg LOD score^d	Genes laying at the mQTL regions
mQTL1.2	1	37.65	RM5310	1.98	5	11.38	5.42	1
mQTL2.1	2	0.05	RM6800-C560	0.07	7	10.42	4.17	15
mQTL5.1	5	9.01	RG207-C1629	0.86	12	12.75	4.42	103
mQTL8.1	8	7.99	E23M50.102-P2-G187	0.24	5	14.55	9.78	8
mQTL10.1	10	11.52	S10_5805785-RM496	1.72	5	11.47	3.48	408
mQTL12.1	12	23.03	S12_2405254-S12_2437333	0.9	5	11.81	3.36	24

^aMeta-QTL ^bConfidence interval ^cMean phenotypic variance explained ^eAverage log of odd score

ISSN: 1471-2229