Table 4 Summary of RNA-seq
Sample | Clean reads | Q30 (%) | GC content (%) | Total mapped reads (Percentage in clean reads) | Multiple mapped reads (Percentage in clean reads) | Uniquely mapped reads (Percentage in clean reads) |
|---|---|---|---|---|---|---|
CK_1 | 7.00 | 96.92 | 44.2 | 37,255,861 (78.81%) | 3,549,595 (7.51%) | 33,706,266 (71.30%) |
CK_2 | 6.87 | 97.13 | 44.09 | 36,869,450 (79.48%) | 3,492,064 (7.53%) | 33,377,386 (71.95%) |
CK_3 | 6.96 | 96.93 | 44.05 | 37,411,969 (79.77%) | 3,479,650 (7.42%) | 33,932,319 (72.35%) |
IAA_1 | 7.07 | 96.83 | 43.65 | 37,987,758 (79.99%) | 3,413,495 (7.19%) | 34,574,263 (72.81%) |
IAA_2 | 6.90 | 97.02 | 43.6 | 37,684,265 (81.13%) | 3,453,280 (7.43%) | 34,230,985 (73.70%) |
IAA_3 | 7.03 | 96.75 | 43.56 | 38,921,122 (82.32%) | 3,505,116 (7.41%) | 35,416,006 (74.90%) |
NPA_1 | 6.90 | 96.92 | 43.78 | 38,180,794 (82.07%) | 3,490,709 (7.50%) | 34,690,085 (74.57%) |
NPA_2 | 7.05 | 96.77 | 43.76 | 38,810,712 (81.86%) | 3,488,603 (7.36%) | 35,322,109 (74.50%) |
NPA_3 | 6.97 | 96.97 | 43.83 | 38,505,933 (81.92%) | 3,569,760 (7.59%) | 34,936,173 (74.33%) |